Liana-MCP
About
A natural language interface for cell-cell communication analysis using the Liana framework.
Details
- Author
- scmcphub
- Downloads
- 294
- Categories
- Developer Tools, Other
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- IO module for reading and writing scRNA-Seq data
- Cell-cell communication inference methods
- Plotting module including circle plot and dotplot
- Natural language interface for scRNA-Seq analysis
- Compatible with AI clients, plugins, and agent frameworks
Install via pip: pip install Liana-mcp. Run locally with liana-mcp run and configure your MCP client with "command": "liana-mcp", "args": ["run"]. For remote access, run Liana-mcp run --transport shttp --port 8000 and set the client URL to http://localhost:8000/mcp.
Natural language interface for scRNA-Seq analysis with Liana through MCP.
- IO module like read and write scRNA-Seq data
- Cell-cell communication method
- Plotting module, circle plot, dotplot
- Anyone who wants to do scRNA-Seq analysis natural language!
- Agent developers who want to call Liana's functions for their applications
You can use Liana-mcp in most AI clients, plugins, or agent frameworks that support the MCP:
- AI clients, like Cherry Studio
- Plugins, like Cline
- Agent frameworks, like Agno
A demo showing scRNA-Seq cell cluster analysis in a AI client Cherry Studio using natural language based on Liana-mcp
https://github.com/user-attachments/assets/40fb5bd8-a166-4993-9979-3258ef6646a0
scmcphub's complete documentation is available athttps://docs.scmcphub.org
Refer to the following configuration in your MCP client:
"mcpServers": { "liana-mcp": { "command": "/home/test/bin/liana-mcp", "args": [ "run" ] } }
Refer to the following configuration in your MCP client:
liana-mcp run --transport shttp --port 8000
Then configure your MCP client in local AI client, like this:
"mcpServers": { "liana-mcp": { "url": "http://localhost:8000/mcp" } }
If you have any questions, welcome to submit an issue, or contact me(hsh-me@outlook.com). Contributions to the code are also welcome!
If you use liana-mcp in for your research, please consider citing following work:
Dimitrov D., Schäfer P.S.L, Farr E., Rodriguez Mier P., Lobentanzer S., Badia-i-Mompel P., Dugourd A., Tanevski J., Ramirez Flores R.O. and Saez-Rodriguez J. LIANA+ provides an all-in-one framework for cell–cell communication inference. Nat Cell Biol (2024).https://doi.org/10.1038/s41556-024-01469-w
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